PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G20500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 699aa    MW: 74550.5 Da    PI: 5.9455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G20500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-06462484225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C ++ar G C  Gd C++ H
  OPUNC01G20500.1 462 KSKPCTHYAR-GSCLKGDDCPYDH 484
                      6789******.************* PP

2zf-CCCH31.14e-10490511526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  OPUNC01G20500.1 490 PCHNFMENGMCIRGDKCKFSHV 511
                      7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.042431458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5432456IPR000571Zinc finger, CCCH-type
SMARTSM003560.026432457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4459485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187460487IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5460486IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5462485IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018488512IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6489512IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277490513IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7490511IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4490510IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MEEPSPVPPA AAPASLAAAP ATDALSRRRA HLDSSSYRAL SRLFSHCLHL HPPRHAARPD  60
AEVEPAAATA AAATPPGGFG GLPHGVSPPP ADAGCDRGKN LEVEVALGKP TPHETSSTSA  120
SPDAAVNPTT DPATVPQGTA DGTVAGIERV EEVVFAGSTS EKADADGKEL GAGAGLMGDD  180
EALRSMQACL DGEDNELVNE MVDNDDEKLQ LDAMMSNLSG LLDDASAGIM SAQSCGLSGD  240
KLQSDDRVVG EVKELGAGIG NDKSVGNLDH GSIDHGGFEE GEIEGDTQNL DADDSVNSEL  300
EDDVDGVELV EDFDSRRIGE NGSCGHDVKS HNLHLIPQKG NGDPARNNQC NSKDNSQLHV  360
AREQAVSYDE VVDWNETPLP DDKAVKQGNT RKRTLTEERK AKKTKNKRIK RALQREAEGV  420
KRLKLQPAIK PKVVQDCRFY LHGKCQQGNL CKFSHDTTPL TKSKPCTHYA RGSCLKGDDC  480
PYDHELSKYP CHNFMENGMC IRGDKCKFSH VIPTAEGPST PDAKKSNASL LPEKANCQEQ  540
TSRQKTSTVY SGEPVTSAPI KHHSILKNLA GISGNAQKAP VRIPKGIQFL PFNKARSDSS  600
ILHQDVVSTE KHKNPTGGPH QNFGGPQPAE GEKNGKHNGH RSAPLLDEKN SSKQANLHPC  660
SEPQKNSLPT TAAVPSSVTQ HEFSEASRIL QEFLFGSGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622402.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_015622403.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A0E0JKB20.0A0A0E0JKB2_ORYPU; Uncharacterized protein
STRINGBGIOSGA003802-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.14e-07C3H family protein